Steric constraint in the primary photoproduct of an archaeal rhodopsin from regiospecific perturbation of C-D stretching vibration of the retinyl chromophore

J Am Chem Soc. 2005 Nov 23;127(46):16036-7. doi: 10.1021/ja056203a.

Abstract

In visual and archaeal rhodopsins, light energy is stored in the chromophore-protein interaction after retinal photoisomerization. This paper reports a novel method to monitor the steric constraint after retinal isomerization by use of enhanced C-D stretching vibrations. In the difference FTIR spectra between an archaeal light-sensor pharaonis phoborhodopsin (ppR) and the primary K intermediate at 77 K, no peaks were observed in the 2160-2330 cm-1 region for deuterated retinals at position 7, 8, 10, 11, 12, and 15, whereas a strong peak appeared at 2244 cm-1 for the K intermediate of ppR possessing a C14-D-labeled retinal. The 2244-cm-1 band is assigned as the C14-D stretching vibration, and enhanced absorption in the K state probably originates from the local steric constraint at the C14-D position (also possible electrostatic field effects) after the C13=C14 double bond rotation.

MeSH terms

  • Molecular Structure
  • Photochemistry
  • Retinaldehyde / chemistry*
  • Retinaldehyde / metabolism*
  • Rhodopsins, Microbial / chemistry*
  • Rhodopsins, Microbial / metabolism*
  • Spectroscopy, Fourier Transform Infrared
  • Stereoisomerism
  • Vibration

Substances

  • Rhodopsins, Microbial
  • Retinaldehyde