[Cloning and bioinformatics analysis of a thrombin-like enzyme gene from Agkistrodon acutus]

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2005 Aug;13(4):542-7.
[Article in Chinese]

Abstract

The venoms of Viperidae and Crotalidae snakes contain a large variety of proteins and peptides affecting the hemostatic system, which classified as coagulant, anticoagulant and fibrinolytic factors. To obtaind the thrombin-like enzyme gene of snake venoms, primers 1 5' ATGGTGCTGATCAGAGTGCTAGC 3' and 2 5' CTCCTCTTAA-CTTTTTCAAAAGTTT 3' were designed according to the snake venom thrombin-like enzyme highly conserved regions of 5' and 3'. Total RNA was prepared from the venom glands of a D. acutus specimen collected from Guangxi province of China, RT-PCR was conducted to amplify the gene of the venom thrombin-like enzyme (TLE). A 0.8 kb DNA fragment was specifically amplified, inserted into the pMD18-T vector and transformed into Escherichia coli strain DH5alpha, then identified by PCR and sequencing. The results showed that this cDNA shared great sequence homology (98.5%) with the published snake TLE cDNA sequence, the deduced amino acid sequence of this TLE encoded by the 783 bp consisted of 260 amino acids, which included a signal peptide of 24 amino acids and a matured peptide of 236 amino acids. In conclusion, a new cDNA encoding snake TLE was obtained by amplificantion.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Agkistrodon / genetics*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cloning, Molecular
  • Crotalid Venoms / biosynthesis
  • Crotalid Venoms / enzymology*
  • Crotalid Venoms / genetics*
  • DNA, Complementary / chemistry
  • DNA, Complementary / genetics
  • Escherichia coli / genetics
  • Metalloendopeptidases / biosynthesis
  • Metalloendopeptidases / genetics
  • Molecular Sequence Data
  • Recombinant Proteins / biosynthesis
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Thrombin / biosynthesis
  • Thrombin / genetics*

Substances

  • Agkistrodon venoms
  • Crotalid Venoms
  • DNA, Complementary
  • Recombinant Proteins
  • Thrombin
  • thrombin-like protein, Agkistrodon acutus
  • Metalloendopeptidases

Associated data

  • GENBANK/AY861382