Dyella koreensis sp. nov., a beta-glucosidase-producing bacterium

Int J Syst Evol Microbiol. 2005 Jul;55(Pt 4):1625-1628. doi: 10.1099/ijs.0.63695-0.

Abstract

A bacterial strain (designated BB4(T)), which has beta-glucosidase activity, was isolated from soil around the roots of bamboo plants. Cells were Gram-negative, aerobic, non-motile and straight-rod-shaped. Phylogenetic analysis of 16S rRNA gene sequences revealed a clear affiliation with members of the family 'Xanthomonadaceae'. The 16S rRNA gene sequence of strain BB4(T) showed the following sequence similarities: 97.7% to Dyella japonica XD53(T), 97.1% to Frateuria aurantia LMG 1558(T), 96.2% to Fulvimonas soli LMG 19981(T), 94.3% to Rhodanobacter lindaniclasticus RP5575(T) and <90% to other members of the 'Gammaproteobacteria'. The G+C content of the genomic DNA was 63.8 mol%. The major fatty acids were branched forms, especially large proportions of iso-C(15:0), iso-C(17:0) and iso-C(17:1)omega9c, similar to the profile of the genus Dyella. The results of DNA-DNA hybridization with D. japonica XD53(T) and Frateuria aurantia LMG 1558(T), in combination with phenotypic characteristics and 16S rRNA gene sequence analysis, demonstrated that strain BB4(T) should be classified as a novel Dyella species. The name Dyella koreensis sp. nov. is proposed, with strain BB4(T) (=KCTC 12359(T)=NBRC 100831(T)) as the type strain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / analysis
  • DNA, Ribosomal / analysis
  • Genes, rRNA
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny
  • Plant Roots / microbiology*
  • Plants / microbiology
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Species Specificity
  • Xanthomonadaceae / classification*
  • Xanthomonadaceae / enzymology*
  • Xanthomonadaceae / genetics
  • Xanthomonadaceae / physiology
  • beta-Glucosidase / biosynthesis*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • beta-Glucosidase

Associated data

  • GENBANK/AY884571