An approach for genogrouping of Japanese isolates of aquabirnaviruses in a new genogroup, VII, based on the VP2/NS junction region

J Gen Virol. 2005 Jul;86(Pt 7):1973-1978. doi: 10.1099/vir.0.80438-0.

Abstract

Aquabirnaviruses, represented by Infectious pancreatic necrosis virus (IPNV), have been isolated from epizootics in salmonids and a variety of aquatic animals in the world; six genogroups of aquabirnaviruses have been identified. In comparisons of nucleotide sequences of the VP2/NS junction region, maximum nucleotide diversities of 30.8 % were observed among 93 worldwide aquabirnavirus isolates. A phylogenetic tree revealed the existence of a new genogroup, VII, for Japanese aquabirnavirus isolates from marine fish and molluscan shellfish. Nucleotide diversities between genogroups VII and I-VI were 18.7 % or greater. At the nucleotide level, Japanese IPNV isolates from epizootics in salmonids were nearly identical to a genogroup I strain from the USA or Canada. It is suggested that Japanese IPNV isolates belonging to genogroup I were originally introduced from North American sources, whereas Japanese aquabirnavirus isolates of genogroup VII were from marine aquatic animals indigenous to Japan.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Aquabirnavirus / classification*
  • Aquabirnavirus / genetics*
  • Aquabirnavirus / isolation & purification
  • Birnaviridae Infections / veterinary*
  • Birnaviridae Infections / virology
  • Capsid Proteins / genetics
  • Fish Diseases / virology*
  • Fishes / virology*
  • Infectious pancreatic necrosis virus / classification
  • Infectious pancreatic necrosis virus / genetics
  • Infectious pancreatic necrosis virus / isolation & purification
  • Japan
  • Molecular Sequence Data
  • Phylogeny
  • Salmonidae / virology
  • Sequence Analysis, DNA
  • Viral Nonstructural Proteins / genetics

Substances

  • Capsid Proteins
  • Viral Nonstructural Proteins

Associated data

  • GENBANK/AB179699
  • GENBANK/AB179700
  • GENBANK/AB179701
  • GENBANK/AB179702
  • GENBANK/AB179703
  • GENBANK/AB179704
  • GENBANK/AB179705
  • GENBANK/AB179706
  • GENBANK/AB179707
  • GENBANK/AB179708
  • GENBANK/AB179709
  • GENBANK/AB179710
  • GENBANK/AB179711
  • GENBANK/AB179712