Sphingopyxis baekryungensis sp. nov., an orange-pigmented bacterium isolated from sea water of the Yellow Sea in Korea

Int J Syst Evol Microbiol. 2005 May;55(Pt 3):1223-1227. doi: 10.1099/ijs.0.63495-0.

Abstract

A Gram-negative, motile, slightly halophilic bacterial strain, SW-150(T), was isolated from sea water of the Yellow Sea, Korea, and was characterized by a polyphasic taxonomic approach. Strain SW-150(T) grew optimally at 25-30 degrees C and in the presence of 2 % (w/v) NaCl. The isolate could be distinguished from other Sphingopyxis species in producing an orange pigment. It contained ubiquinone-10 as the predominant respiratory lipoquinone and C(18 : 1)omega7c and C(17 : 1)omega6c as the major fatty acids. No 3-hydroxy fatty acids were detected. Major polar lipids were sphingoglycolipid, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The DNA G+C content was 63 mol%. Comparative 16S rRNA gene sequence analyses showed that strain SW-150(T) was phylogenetically affiliated to the genus Sphingopyxis of the family Sphingomonadaceae. Similarity values between the 16S rRNA gene sequences of strain SW-150(T) and the type strains of Sphingopyxis species ranged from 91.6 to 94.2 %, making it possible to categorize strain SW-150(T) as a species that is separate from previously described Sphingopyxis species. On the basis of phenotypic properties and phylogenetic distinctiveness, SW-150(T) (=KCTC 12231(T) = DSM 16222(T)) should be classified as the type strain of a novel Sphingopyxis species, for which the name Sphingopyxis baekryungensis sp. nov. is proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Composition
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / isolation & purification
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / isolation & purification
  • Fatty Acids / analysis
  • Fatty Acids / isolation & purification
  • Genes, rRNA
  • Gentian Violet
  • Growth Inhibitors / pharmacology
  • Korea
  • Molecular Sequence Data
  • Movement
  • Phenazines
  • Phospholipids / analysis
  • Phospholipids / isolation & purification
  • Phylogeny
  • Pigments, Biological / biosynthesis
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Sodium Chloride / pharmacology
  • Sphingolipids / analysis
  • Sphingolipids / isolation & purification
  • Sphingomonadaceae / classification*
  • Sphingomonadaceae / cytology
  • Sphingomonadaceae / isolation & purification*
  • Sphingomonadaceae / physiology
  • Temperature
  • Ubiquinone / analysis
  • Ubiquinone / isolation & purification
  • Water Microbiology

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Gram's stain
  • Growth Inhibitors
  • Phenazines
  • Phospholipids
  • Pigments, Biological
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Sphingolipids
  • Ubiquinone
  • Sodium Chloride
  • Gentian Violet

Associated data

  • GENBANK/AY608604