Re-analysis of 34 full-length HIV-1 intersubtype recombinant sequences

Infect Genet Evol. 2005 Apr;5(3):225-9. doi: 10.1016/j.meegid.2004.05.010. Epub 2004 Dec 7.

Abstract

One of the main characteristics of the HIV-1 is its extensive genetic heterogeneity. Intersubtype recombination was first described in 1995 and since then a significant proportion of the HIV-1 isolates was found to comprise mosaic sequences. Re-analysis of 34 full-length HIV-1 intersubtype recombinants, including all "pure" HIV-1 subtypes revealed that 19 of the 34 analyzed mosaics consist of a more complex mosaic pattern than initially described. These findings indicate that the complexity of the HIV-1 recombinants is much greater than previously estimated.

MeSH terms

  • Genetic Variation
  • HIV-1 / genetics*
  • Phylogeny
  • Recombination, Genetic*
  • Sequence Alignment / methods
  • Sequence Analysis / methods
  • Software