Efficient DNA binding by optically Pure Ruthenium Tris(bipyridyl) complexes incorporating carboxylic functionalities. Solution and structural analysis

Inorg Chem. 2004 Dec 13;43(25):7986-93. doi: 10.1021/ic0494657.

Abstract

Herein, we report on the binding of optically pure ruthenium complexes Delta- or Lambda-[Ru(bpy)(2)(L-L)][PF(6)](2) [L-L = Hcmbpy = 4-carboxy-4'-methyl-2,2'-bipyridine (1), L-L = H(2)dcbpy = 4,4'-dicarboxy-2,2'-bipyridine (2)] to DNA. The binding constants of the two enantiomeric Delta-1 and Lambda-1 complexes to DNA were estimated from titration monitored by (1)H NMR spectroscopy. 2D transferred NOESY (TRNOESY) experiments support the conclusion that Delta-1 and Lambda-1 bind to DNA and that an intermediate-to-fast exchange occurs between bound and free Ru(II) complex. Further, evidence for enantioselective DNA cleavage by Delta-2 is provided by means of gel electrophoresis performed in the presence and in the absence of light; in contrast, the Lambda-2 enantiomer does not. The IR spectrum of enantiomer Delta-2 (or Lambda-2) compared to that of the racemate (rac-2) gives evidence that, in the latter form, the enantiomers are strongly associated. Moreover the X-ray structure of rac-2 was also determined and exhibits as an outstanding feature the formation of a one-dimensional supramolecular species in which the cohesion of the system is maintained by strong hydrogen bonding between carboxylic acid groups of enantiomers Delta-2 and Lambda-2 (cationic parts) with d(O...O) = 2.6 A in agreement with the infrared results. The conclusion that can be drawn from IR and X-ray spectroscopies together is that the self-association in rac-2 is strong.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 2,2'-Dipyridyl / chemistry*
  • Algorithms
  • Binding Sites
  • Crystallography, X-Ray
  • DNA / chemistry*
  • DNA / metabolism
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Structure
  • Organometallic Compounds / chemistry*
  • Ruthenium / chemistry*
  • Spectrophotometry, Infrared
  • Stereoisomerism

Substances

  • Organometallic Compounds
  • 2,2'-Dipyridyl
  • Ruthenium
  • DNA