Evidence for positive epistasis in HIV-1

Science. 2004 Nov 26;306(5701):1547-50. doi: 10.1126/science.1101786.

Abstract

Reproductive strategies such as sexual reproduction and recombination that involve the shuffling of parental genomes for the production of offspring are ubiquitous in nature. However, their evolutionary benefit remains unclear. Many theories have identified potential benefits, but progress is hampered by the scarcity of relevant data. One class of theories is based on the assumption that mutations affecting fitness exhibit negative epistasis. Retroviruses recombine frequently and thus provide a unique opportunity to test these theories. Using amino acid sequence data and fitness values from 9466 human immunodeficiency virus 1 (HIV-1) isolates, we find in contrast to these theories strong statistical evidence for a predominance of positive epistasis in HIV-1.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Amino Acids
  • Anti-HIV Agents / pharmacology
  • Drug Resistance, Viral
  • Epistasis, Genetic*
  • Evolution, Molecular*
  • Genotype
  • HIV Infections / drug therapy
  • HIV Infections / virology
  • HIV Protease / chemistry
  • HIV Protease / genetics
  • HIV Protease / metabolism
  • HIV Reverse Transcriptase / chemistry
  • HIV Reverse Transcriptase / genetics
  • HIV Reverse Transcriptase / metabolism
  • HIV-1 / drug effects
  • HIV-1 / genetics*
  • HIV-1 / physiology
  • Humans
  • Mutation
  • Recombination, Genetic*
  • Software
  • Virus Replication

Substances

  • Amino Acids
  • Anti-HIV Agents
  • HIV Reverse Transcriptase
  • HIV Protease