Translational frameshifting mediated by a viral sequence in plant cells

Proc Natl Acad Sci U S A. 1992 Mar 15;89(6):2262-6. doi: 10.1073/pnas.89.6.2262.

Abstract

It has been proposed that the polymerase gene of barley yellow dwarf virus and related viruses is expressed by a ribosomal frameshift event during translation. The 5' end of this gene overlaps with the 3' end of an upstream gene that is in a different reading frame. The region of overlap is similar to sequences in retro- and coronaviruses that are known to express their polymerase genes by frameshifting. This overlap region includes a "shifty" heptanucleotide, followed by a highly structured region that may contain a pseudoknot. Sequences of 115 or 144 base pairs that span this region from barley yellow dwarf virus (PAV serotype) genomic RNA were introduced into a plasmid, so that a reporter gene could be expressed in plant cells only if a minus one (-1) frameshift event occurred. Frameshifting was detected at a rate of approximately 1%. This frameshifting was abolished when the stop codon at the 3' end of the upstream open reading frame was deleted. A sequence expected to form a strong stem-loop immediately upstream of the frameshift site was unnecessary for frameshifting, and initiation at AUG codons within the stem-loop appeared to be inhibited. Like viruses that infect hosts in other kingdoms, plant viruses also can induce frameshifting in translation of their genes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Cloning, Molecular
  • Codon
  • Frameshift Mutation*
  • Glucuronidase / analysis
  • Glucuronidase / genetics*
  • Molecular Sequence Data
  • Oligodeoxyribonucleotides
  • Open Reading Frames
  • Plant Viruses / genetics*
  • Plant Viruses / isolation & purification
  • Plants / genetics
  • Plants / microbiology*
  • Plasmids
  • Polymerase Chain Reaction
  • Protein Biosynthesis*
  • Protoplasts / physiology

Substances

  • Codon
  • Oligodeoxyribonucleotides
  • Glucuronidase