Nocardiopsis salina sp. nov., a novel halophilic actinomycete isolated from saline soil in China

Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1805-1809. doi: 10.1099/ijs.0.63127-0.

Abstract

A moderately halophilic actinomycete strain, designated YIM 90010T, was isolated from a soil sample collected from a hypersaline habitat in Xinjiang Province, China, and then investigated using a polyphasic taxonomic approach. The strain produced abundant aerial mycelia and fragmented substrate mycelia on most media tested; the optimum NaCl concentration for growth was 10 % (w/v) and the optimum growth temperature and pH were 28 degrees C and 7.2, respectively. Chemotaxonomically and phylogenetically, the strain was related to members of the genus Nocardiopsis. The isolate contained chemotaxonomic markers that were diagnostic for the genus Nocardiopsis, i.e. meso-diaminopimelic acid, no diagnostic sugars, and MK-10(H6), MK-10(H8) and MK-12 as the predominant menaquinones. The major fatty acids were iso- and anteiso-branched acids combined with tuberculostearic acid (Me C(18 : 0)), straight-chain saturated fatty acids and unsaturated fatty acids. The G + C content was 73.1 mol%. Phylogenetic analysis confirmed that strain YIM 90010T was a member of the genus Nocardiopsis and most closely related to Nocardiopsis kunsanensis (97.6 % similarity) and Nocardiopsis xinjiangensis (98.1 % similarity). It can be differentiated from these species by using phenotypic characteristics, phylogenetic analysis and DNA-DNA hybridization results. On the basis of the polyphasic evidence, a novel species, Nocardiopsis salina sp. nov., is proposed. The type strain of the species is YIM 90010T (= KCTC 19003T = CCTCC AA 204009T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / cytology
  • Actinomycetales / isolation & purification*
  • Actinomycetales / physiology
  • Bacterial Typing Techniques
  • Base Composition
  • Carbohydrates / analysis
  • China
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / isolation & purification
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / isolation & purification
  • Diaminopimelic Acid / analysis
  • Fatty Acids / analysis
  • Genes, rRNA
  • Growth Inhibitors / pharmacology
  • Hydrogen-Ion Concentration
  • Microscopy, Electron, Scanning
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Saline Solution, Hypertonic / pharmacology
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Stearic Acids / analysis
  • Temperature
  • Vitamin K 2 / analysis

Substances

  • Carbohydrates
  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Growth Inhibitors
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Saline Solution, Hypertonic
  • Stearic Acids
  • Vitamin K 2
  • tuberculostearic acid
  • Diaminopimelic Acid

Associated data

  • GENBANK/AY373031