Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench

Int J Syst Evol Microbiol. 2004 Sep;54(Pt 5):1627-1631. doi: 10.1099/ijs.0.03049-0.

Abstract

Two strains of obligately piezophilic bacteria were isolated from sediment collected from the bottom surface of a small canyon on the seaward slope of the Japan Trench at a depth of 6278 m. The isolated strains, Y223GT and Y251E, are closely affiliated with members of the genus Colwellia on the basis of 16S rRNA gene sequence analysis. The G + C contents of both strains were about 39 mol%. DNA-DNA hybridization values between these strains and Colwellia reference strains were significantly lower than those accepted as the phylogenetic definition of a species. The novel strains are Gram-negative, polarly flagellated and facultatively anaerobic. The optimal pressure for growth was 60 MPa at both 4 and 10 degrees C; the most rapid growth rate was observed at 10 degrees C and 60 MPa. No growth occurred at 15 degrees C under any pressure studied. The major isoprenoid quinone is Q-8. The predominant cellular fatty acids are C16 : 0 and C16 : 1. Based on the taxonomic differences observed, the isolated strains appear to represent a novel obligately piezophilic Colwellia species. The name Colwellia piezophila sp. nov. (type strain Y223GT = JCM 11831T = ATCC BAA-637T) is proposed.

MeSH terms

  • Anaerobiosis
  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / isolation & purification
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / isolation & purification
  • Fatty Acids / analysis
  • Flagella
  • Gammaproteobacteria / classification*
  • Gammaproteobacteria / cytology
  • Gammaproteobacteria / isolation & purification*
  • Gammaproteobacteria / physiology
  • Genes, rRNA
  • Geologic Sediments / microbiology*
  • Hydrostatic Pressure
  • Japan
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny
  • Quinones / analysis
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Temperature
  • Water Microbiology

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Quinones
  • RNA, Bacterial
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/AB094412