The present paper is the first document of a detailed geochemical and mineralogical study of muddy to sandy mud estuarine sediments of the Hugli River collected from five different sites along its course in the coastal areas of West Bengal, northeast India. The present work attempts to establish the status of distribution and environmental implications of 52 elements in the surficial estuarine sediments and their possible sources of derivation. The level of both metallic and non-metallic elements shows a wide range of variation all along the course of the estuary and can be attributed to their differential derivation from the source rocks and differential discharge of untreated effluents originating from industrial, agricultural, aquacultural as well as domestic sewage. The element contents, particularly the heavy metal content in the sediments, are the lowest in the upstream part of the estuary at Diamond Harbor, whereas, these are slightly higher in the intermediate stretch of the estuary at Haldia to highest in the mouth of estuary at Gangasagar. These changes indicate that the metals that are carried from upstream find their ultimate depositional sink at the delta mouth near Gangasagar, where almost all the elements showed elevated values. The majority of the elements have their highest concentrations at Canning, a site within the tidal channel network of the Hugli-Matla drainage basin away from the direct influence of the Hugli River. This site is severely contaminated with huge organic load from domestic sewage, aquaculture, intensive trawling activities and agricultural runoff. Moreover, the site suffers from heavy siltation load causing an almost moribund condition of Matla River at this point. Equi-dimensional quartzo-feldspathic mineral grains are consistent components in the siliciclastic composition of the sediments and their sizes at each station are controlled by respective hydrodynamic conditions. Various flaky minerals (mica, chlorite, hornblende) are also present but show inconsistent patterns of distribution. These flaky minerals remain in suspension for a long time and do not follow the usual law of settling of particles depending on the hydrodynamic regime prevailing in the area. Presented data will serve as a baseline against which future anthropogenic effects may be assessed. A comprehensive account of heavy metal content in sediments from different coastal regions of peninsular India has also been presented for purpose of comparison.