Advances in computational protein design

Curr Opin Struct Biol. 2004 Aug;14(4):487-94. doi: 10.1016/j.sbi.2004.06.002.

Abstract

Computational protein design continues to experience a variety of methodological advances. Several improvements have been suggested for the objective functions used to quantify sequence/structure compatibility. Disparate design strategies based upon dead-end elimination, simulated annealing and statistical design have each recently yielded striking successes involving de novo designed proteins with sizes on the order of 100 residues or greater. Such methods may be used to design new proteins, as well as to redesign natural proteins to facilitate structural and biophysical studies.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.
  • Review

MeSH terms

  • Computational Biology / methods*
  • Computer-Aided Design*
  • Models, Statistical
  • Protein Engineering / methods*
  • Protein Folding
  • Proteins / chemistry*
  • Proteins / metabolism
  • Structure-Activity Relationship

Substances

  • Proteins