Kribbella solani sp. nov. and Kribbella jejuensis sp. nov., isolated from potato tuber and soil in Jeju, Korea

Int J Syst Evol Microbiol. 2004 Jul;54(Pt 4):1345-1348. doi: 10.1099/ijs.0.02953-0.

Abstract

Two actinomycete strains, DSA1T and HD9T, were isolated from a potato tuber and soil from a potato-cultivating field in Jeju, Korea, respectively. A comprehensive 16S rDNA analysis revealed that the isolates belong to the genus Kribbella and share 97.7-98.6% sequence similarity to Kribbella species. The strains also contained typical chemotaxonomic markers of the genus Kribbella: ll-diaminopimelic acid, alanine, glycine and glutamic acid in the cell wall peptidoglycan; mannose, glucose, galactose and ribose as whole cell sugars; diphosphatidylglycerol, phosphatidylcholine and phosphatidylinositol as characteristic phospholipids; and the major menaquinone MK-9 (H4). DNA-DNA hybridization experiments showed that the isolates represented two distinct genomic species. A number of phenotypic properties can be used to differentiate the two isolates from Kribbella species. On the basis of polyphasic evidence, two novel species are proposed: Kribbella solani sp. nov. for strain DSA1T (=KACC 20196T=JCM 12205T) and Kribbella jejuensis sp. nov. for strain HD9T (=KACC 20266T=JCM 12204T).

MeSH terms

  • Actinomycetales / chemistry
  • Actinomycetales / classification*
  • Actinomycetales / isolation & purification*
  • Actinomycetales / physiology
  • Bacterial Typing Techniques
  • Carbohydrates / analysis
  • DNA, Bacterial / chemistry
  • DNA, Ribosomal / chemistry
  • Genes, rRNA / genetics
  • Korea
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Peptidoglycan / chemistry
  • Phospholipids / analysis
  • Phylogeny
  • Plant Tubers / microbiology*
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology
  • Soil Microbiology*
  • Solanum tuberosum / microbiology*
  • Vitamin K 2 / analysis

Substances

  • Carbohydrates
  • DNA, Bacterial
  • DNA, Ribosomal
  • Peptidoglycan
  • Phospholipids
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Vitamin K 2

Associated data

  • GENBANK/AY253862
  • GENBANK/AY253863
  • GENBANK/AY253864
  • GENBANK/AY253865
  • GENBANK/AY253866