Functional properties of the herpes simplex virus type I origin-binding protein are controlled by precise interactions with the activated form of the origin of DNA replication

J Biol Chem. 2004 Jul 9;279(28):29211-7. doi: 10.1074/jbc.M400371200. Epub 2004 May 8.

Abstract

The herpes simplex virus, type I origin-binding protein, OBP, is a superfamily II DNA helicase encoded by the UL9 gene. OBP binds in a sequence-specific and cooperative way to the viral origin of replication oriS. OBP may unwind partially and introduce a hairpin into the double-stranded origin of replication. The formation of the novel conformation referred to as oriS* also requires the single-stranded DNA-binding protein, ICP8, and ATP hydrolysis. OBP forms a stable complex with oriS*. The hairpin in oriS* provides a site for sequence-specific attachment, and a single-stranded region triggers ATP hydrolysis. Here we use Escherichia coli exonuclease I to map the binding of the C-terminal domain of OBP to the hairpin and the helicase domains to the single-stranded tail. The helicase domains cover a stretch of 23 nucleotides of single-stranded DNA. Using streptavidin-coated magnetic beads, we show that OBP may bind two copies of double-stranded DNA (one biotin-labeled and the other one radioactively labeled) but only one copy of oriS*. It is the length of the single-stranded tail that determines the stoichiometry of OBP.DNA complexes. OBP interacts with the bases of the single-stranded tail, and ATP hydrolysis is triggered by position-specific interactions between OBP and bases in the single-stranded tail of oriS*.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Base Sequence
  • DNA / chemistry
  • DNA / metabolism*
  • DNA Helicases / genetics
  • DNA Helicases / metabolism*
  • DNA Repair Enzymes
  • DNA Replication*
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Escherichia coli Proteins / metabolism
  • Exodeoxyribonucleases / metabolism
  • Herpesvirus 1, Human / genetics*
  • Macromolecular Substances
  • Models, Genetic
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Protein Conformation
  • Replication Origin*
  • Viral Proteins / chemistry
  • Viral Proteins / genetics
  • Viral Proteins / metabolism*

Substances

  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • ICP8 protein, Simplexvirus
  • Macromolecular Substances
  • Viral Proteins
  • origin-binding proteins, viral
  • UL9 protein, Human herpesvirus 1
  • Adenosine Triphosphate
  • DNA
  • EXO1 protein, human
  • Exodeoxyribonucleases
  • exodeoxyribonuclease I
  • DNA Helicases
  • DNA Repair Enzymes