Structures and energetics of models for the active site of acetyl-coenzyme a synthase: role of distal and proximal metals in catalysis

J Am Chem Soc. 2004 Mar 24;126(11):3410-1. doi: 10.1021/ja038083h.

Abstract

Acetyl-coenzyme A (CoA) synthase/carbon monoxide dehydrogenase (ACS/CODH) is a bifunctional enzyme that generates CO from carbon dioxide in the C-cluster of the beta subunit and synthesizes acetyl-CoA from carbon monoxide (CO), CoA, and CH3+ at the active site of the A-cluster in the alpha subunit. On the basis of density functional calculations, we predict that methylation of Nip occurs first, and CO then adds to the NipII-CH3 species to form the intermediate, NipII(CO)(CH3), in which Nip deligates one of its SNid bonds. The CO-insertion/CH3-migration occurs on one metal, the proximal Ni, forming the trigonal planar NipII-acetyl intermediate. The thiolate can bind to NipII and reductively eliminate the thioester. Our calculations disfavor the unprecedented bimetallic CO-insertion/CH3-migration. Ni in the proximal site produces a better catalyst than does Cu.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acetate-CoA Ligase / chemistry*
  • Acetate-CoA Ligase / metabolism*
  • Binding Sites
  • Catalysis
  • Copper / chemistry
  • Copper / metabolism
  • Iron-Sulfur Proteins / chemistry
  • Iron-Sulfur Proteins / metabolism
  • Metals, Heavy / chemistry*
  • Metals, Heavy / metabolism*
  • Nickel / chemistry
  • Nickel / metabolism
  • Thermodynamics
  • Zinc / chemistry
  • Zinc / metabolism

Substances

  • Iron-Sulfur Proteins
  • Metals, Heavy
  • Copper
  • Nickel
  • Acetate-CoA Ligase
  • Zinc