PARIS: a proteomic analysis and resources indexation system

Bioinformatics. 2004 Jan 1;20(1):133-5. doi: 10.1093/bioinformatics/btg389.

Abstract

We developed a system for managing data from two-dimensional electrophoresis-based proteomic experiments. Named PARIS, the system stores gel image and information about experiments and analysis procedures, allows the user to search and navigate in genomic and proteomic data, supports visual verification and validation of the analysis results, and provides tools for cross multi-experiment and multi-experimenter data validation and exploration.

Availability: The software is freely available from http://www.inra.fr/bia/J/imaste/Projets/PARIS/index.html

MeSH terms

  • Abstracting and Indexing*
  • Database Management Systems*
  • Databases, Protein*
  • Documentation
  • Gene Expression Profiling / methods
  • Information Storage and Retrieval / methods*
  • Proteome / chemistry*
  • Proteome / genetics*
  • Sequence Alignment / methods
  • Sequence Analysis, Protein / methods*
  • Software
  • User-Computer Interface*

Substances

  • Proteome