RNA extraction for quantitative enterovirus RT-PCR: comparison of three methods

J Pharm Biomed Anal. 2003 Nov 24;33(4):819-23. doi: 10.1016/s0731-7085(03)00312-1.

Abstract

Quantification of virus-like RNA sequences in biological fluids, like serum and cerebrospinal fluid, requires an RNA extraction method that is both reproducible and fast. Three RNA extraction methods were tested on enteroviruses: (1) the acid guanidine thiocyanate-phenol/chloroform (AGPC) method; (2) a method based on differential precipitation of the RNA and (3) a 'bind-wash-elute' system based on silica-gel membrane binding. The latter two methods yielded a comparable detection limit as measured by RT-PCR ELISA. The detection limit for the AGPC method was 10 times higher. The relative standard deviation for the bind-wash-elute method (3%) was superior to that of the other methods tested (both 20%) and provides a reliable and fast method to extract (viral) RNA from biological fluids for quantification by RT-PCR.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Enterovirus / chemistry
  • Enterovirus / isolation & purification*
  • Enzyme-Linked Immunosorbent Assay / methods
  • RNA / analysis*
  • RNA Viruses / chemistry
  • RNA Viruses / isolation & purification
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Spectrophotometry, Ultraviolet / methods

Substances

  • RNA