Pre-steady-state analysis of the nucleoside hydrolase of Trypanosoma vivax. Evidence for half-of-the-sites reactivity and rate-limiting product release

Biochemistry. 2003 Nov 11;42(44):12902-8. doi: 10.1021/bi0347914.

Abstract

The nucleoside hydrolase (NH) of the Trypanosoma vivax parasite catalyzes the hydrolysis of the N-glycosidic bond in ribonucleosides according to the following reaction: beta-purine (or pyrimidine) nucleoside + H(2)O --> purine (pyrimidine) base + ribose. The reaction follows a highly dissociative nucleophilic displacement reaction mechanism with a ribosyl oxocarbenium-like transition state. This paper describes the first pre-steady-state analysis of the conversion of a number of purine nucleosides. The NH exhibits burst kinetics and behaves with half-of-the-sites reactivity. The analysis suggests that the NH of T. vivax follows a complex multistep mechanism in which a common slow step different from the chemical hydrolysis is rate limiting. Stopped-flow fluorescence binding experiments with ribose indicate that a tightly bound enzyme-ribose complex accumulates during the enzymatic hydrolysis of the common purine nucleosides. This is caused by a slow isomerization between a tight and a loose enzyme-ribose complex forming the rate-limiting step on the reaction coordinate.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding Sites
  • Guanosine / chemistry
  • Hydrolysis
  • Kinetics
  • N-Glycosyl Hydrolases / chemistry*
  • Protein Conformation
  • Protozoan Proteins / chemistry*
  • Purine Nucleosides / chemistry
  • Ribose / chemistry
  • Spectrometry, Fluorescence
  • Spectrophotometry
  • Substrate Specificity
  • Trypanosoma vivax / enzymology*

Substances

  • Protozoan Proteins
  • Purine Nucleosides
  • Guanosine
  • Ribose
  • N-Glycosyl Hydrolases