B-cell and plasma-cell splicing differences: a potential role in regulated immunoglobulin RNA processing

RNA. 2003 Oct;9(10):1264-73. doi: 10.1261/rna.5820103.

Abstract

The immunoglobulin micro pre-mRNA is alternatively processed at its 3' end by competing splice and cleavage-polyadenylation reactions to generate mRNAs encoding the membrane-associated or secreted forms of the IgM protein, respectively. The relative use of the competing processing pathways varies during B-lymphocyte development, and it has been established previously that cleavage-polyadenylation activity is higher in plasma cells, which secrete IgM, than in B cells, which produce membrane-associated IgM. To determine whether RNA-splicing activity varies during B-lymphocyte development to contribute to micro RNA-processing regulation, we first demonstrate that micro pre-mRNA processing is sensitive to artificial changes in the splice environment by coexpressing SR proteins with the micro gene. To explore differences between the splice environments of B cells and plasma cells, we analyzed the splicing patterns from two different chimeric non-Ig genes that can be alternatively spliced but have no competing cleavage-polyadenylation reaction. The ratio of intact exon splicing to cryptic splice site use from one chimeric gene differs between several B-cell and several plasma-cell lines. Also, the amount of spliced RNA is higher in B-cell than plasma-cell lines from a set of genes whose splicing is dependent on a functional exonic splice enhancer. Thus, there is clear difference between the B-cell and plasma-cell splicing environments. We propose that both general cleavage-polyadenylation and general splice activities are modulated during B-lymphocyte development to ensure proper regulation of the alternative micro RNA processing pathways.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alternative Splicing*
  • Animals
  • B-Lymphocytes / metabolism*
  • Cell Line
  • Gene Expression Regulation
  • Humans
  • Immunoglobulin mu-Chains / genetics*
  • Introns
  • Mice
  • Plasma Cells / metabolism*
  • Poly A / metabolism
  • Polyadenylation
  • RNA Processing, Post-Transcriptional*
  • RNA, Messenger / metabolism

Substances

  • Immunoglobulin mu-Chains
  • RNA, Messenger
  • Poly A