Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7

J Bacteriol. 2003 Sep;185(17):5055-65. doi: 10.1128/JB.185.17.5055-5065.2003.

Abstract

Vi capsular polysaccharide production is encoded by the viaB locus, which has a limited distribution in Salmonella enterica serovars. In S. enterica serovar Typhi, viaB is encoded on a 134-kb pathogenicity island known as SPI-7 that is located between partially duplicated tRNA(pheU) sites. Functional and bioinformatic analysis suggests that SPI-7 has a mosaic structure and may have evolved as a consequence of several independent insertion events. Analysis of viaB-associated DNA in Vi-positive S. enterica serovar Paratyphi C and S. enterica serovar Dublin isolates revealed the presence of similar SPI-7 islands. In S. enterica serovars Paratyphi C and Dublin, the SopE bacteriophage and a 15-kb fragment adjacent to the intact tRNA(pheU) site were absent. In S. enterica serovar Paratyphi C only, a region encoding a type IV pilus involved in the adherence of S. enterica serovar Typhi to host cells was missing. The remainder of the SPI-7 islands investigated exhibited over 99% DNA sequence identity in the three serovars. Of 30 other Salmonella serovars examined, 24 contained no insertions at the equivalent tRNA(pheU) site, 2 had a 3.7-kb insertion, and 4 showed sequence variation at the tRNA(pheU)-phoN junction, which was not analyzed further. Sequence analysis of the SPI-7 region from S. enterica serovar Typhi strain CT18 revealed significant synteny with clusters of genes from a variety of saprophytic bacteria and phytobacteria, including Pseudomonas aeruginosa and Xanthomonas axonopodis pv. citri. This analysis suggested that SPI-7 may be a mobile element, such as a conjugative transposon or an integrated plasmid remnant.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Citrobacter freundii / genetics
  • Computational Biology
  • Conjugation, Genetic
  • DNA Transposable Elements
  • Genes, Bacterial*
  • Molecular Sequence Data
  • Multigene Family
  • Plants / microbiology
  • Polysaccharides, Bacterial / genetics*
  • RNA, Transfer, Amino Acyl / genetics
  • Salmonella enterica / classification
  • Salmonella enterica / genetics
  • Salmonella enterica / pathogenicity*
  • Sequence Analysis, DNA
  • Soil Microbiology
  • Virulence

Substances

  • Bacterial Proteins
  • DNA Transposable Elements
  • Polysaccharides, Bacterial
  • RNA, Transfer, Amino Acyl
  • capsular polysaccharide, Salmonella

Associated data

  • GENBANK/AY282413