A new perspective on beta-sheet structures using vibrational Raman optical activity: from poly(L-lysine) to the prion protein

J Am Chem Soc. 2003 Aug 20;125(33):10019-26. doi: 10.1021/ja021464v.

Abstract

The vibrational Raman optical activity (ROA) spectrum of a polypeptide in a model beta-sheet conformation, that of poly(l-lysine), was measured for the first time, and the alpha-helix --> beta-sheet transition monitored as a function of temperature in H(2)O and D(2)O. Although no significant population of a disordered backbone state was detected at intermediate temperatures, some side chain bands not present in either the alpha-helix or beta-sheet state were observed. The observation of ROA bands in the extended amide III region assigned to beta-turns suggests that, under our experimental conditions, beta-sheet poly(L-lysine) contains up-and-down antiparallel beta-sheets based on the hairpin motif. The ROA spectrum of beta-sheet poly(L-lysine) was compared with ROA data on a number of native proteins containing different types of beta-sheet. Amide I and amide II ROA band patterns observed in beta-sheet poly(L-lysine) are different from those observed in typical beta-sheet proteins and may be characteristic of an extended flat multistranded beta-sheet, which is unlike the more irregular and twisted beta-sheet found in most proteins. However, a reduced isoform of the truncated ovine prion protein PrP(94-233) that is rich in beta-sheet shows amide I and amide II ROA bands similar to those of beta-sheet poly(L-lysine), which suggests that the C-terminal domain of the prion protein is able to support unusually flat beta-sheets. A principal component analysis (PCA) that identifies protein structural types from ROA band patterns provides a useful representation of the structural relationships among the polypeptide and protein states considered in the study.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bacterial Outer Membrane Proteins / chemistry
  • Capsid Proteins / chemistry
  • Concanavalin A / chemistry
  • Levivirus
  • Polylysine / chemistry*
  • Prions / chemistry*
  • Protein Structure, Secondary
  • Sheep
  • Spectrum Analysis, Raman / methods*
  • Subtilisins / chemistry
  • Virulence Factors, Bordetella / chemistry

Substances

  • Bacterial Outer Membrane Proteins
  • Capsid Proteins
  • Prions
  • Virulence Factors, Bordetella
  • Concanavalin A
  • Polylysine
  • pertactin
  • Subtilisins