Comparative evaluation of real-time PCR assays for detection of the human metapneumovirus

J Clin Microbiol. 2003 Aug;41(8):3631-5. doi: 10.1128/JCM.41.8.3631-3635.2003.

Abstract

The human metapneumovirus (hMPV) is a new member of the Paramyxoviridae family associated with acute respiratory tract infections in humans. The objective of this study was to compare the sensitivity of real-time RT-PCR assays performed in a LightCycler instrument and designed to amplify the viral nucleoprotein (N), matrix (M), fusion (F), phosphoprotein (P), and polymerase (L) genes. In a first evaluation of 20 viral cultures with characteristics compatible with hMPV cytopathic effect, the PCR positivity rates were 100, 90, 75, 60, and 55% using primers for the N, L, M, P, and F genes. In a second evaluation of 10 nasopharyngeal aspirates from children with bronchiolitis and found to be positive for the hMPV N gene, the PCR positivity rates for the L, M, P, and F genes were 90, 60, 30, and 80%, respectively. The analytic sensitivity of the real-time RT-PCR assay for the hMPV N gene was 100 copies using a transcribed viral plasmid. In conclusion, real-time PCR assays aimed at amplifying the N and L genes which are coding for two internal viral proteins appear particularly suitable for hMPV diagnostic.

Publication types

  • Comparative Study

MeSH terms

  • Base Sequence
  • DNA Primers
  • DNA, Viral / genetics
  • DNA, Viral / isolation & purification
  • Genotype
  • Humans
  • Metapneumovirus / genetics
  • Metapneumovirus / isolation & purification*
  • Orthomyxoviridae Infections / diagnosis*
  • Polymerase Chain Reaction / methods*
  • RNA, Viral / genetics
  • RNA, Viral / isolation & purification
  • Reproducibility of Results

Substances

  • DNA Primers
  • DNA, Viral
  • RNA, Viral