Subgroup C avian metapneumovirus (MPV) and the recently isolated human MPV exhibit a common organization but have extensive sequence divergence in their putative SH and G genes

J Gen Virol. 2003 Aug;84(Pt 8):2169-2178. doi: 10.1099/vir.0.19043-0.

Abstract

The genes encoding the putative small hydrophobic (SH), attachment (G) and polymerase (L) proteins of the Colorado isolate of subgroup C avian pneumovirus (APV) were entirely or partially sequenced. They all included metapneumovirus (MPV)-like gene start and gene end sequences. The deduced Colorado SH protein shared 26.9 and 21.7 % aa identity with its counterpart in human MPV (hMPV) and APV subgroup A, respectively, but its only significant aa similarities were to hMPV. Conserved features included a common hydrophobicity profile with an unique transmembrane domain and the conservation of most extracellular cysteine residues. The Colorado putative G gene encoded several ORFs, the longer of which encoded a 252 aa long type II glycoprotein with aa similarities to hMPV G only (20.6 % overall aa identity with seven conserved N-terminal residues). The putative Colorado G protein shared, at best, 21.0 % aa identity with its counterparts in the other APV subgroups and did not contain the extracellular cysteine residues and short aa stretch highly conserved in other APVs. The N-terminal end of the Colorado L protein exhibited 73.6 and 54.9 % aa identity with hMPV and APV subgroup A, respectively, with four aa blocks highly conserved among Pneumovirus: Phylogenetic analysis performed on the nt sequences confirmed that the L sequences from MPVs were genetically related, whereas analysis of the G sequences revealed that among MPVs, only APV subgroups A, B and D clustered together, independently of both the Colorado isolate and hMPV, which shared weak genetic relatedness at the G gene level.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bird Diseases / virology*
  • Birds
  • DNA-Directed RNA Polymerases / genetics
  • Genes, Viral
  • Genetic Variation*
  • HN Protein / genetics*
  • Humans
  • Metapneumovirus / classification*
  • Metapneumovirus / genetics
  • Molecular Sequence Data
  • Paramyxoviridae Infections / virology
  • Phylogeny
  • Retroviridae Proteins, Oncogenic / genetics*
  • Sequence Analysis, DNA*
  • Viral Envelope Proteins

Substances

  • HN Protein
  • Retroviridae Proteins, Oncogenic
  • Viral Envelope Proteins
  • attachment protein G
  • small hydrophobic protein, virus
  • DNA-Directed RNA Polymerases

Associated data

  • GENBANK/AJ457967
  • GENBANK/AJ496565