Rapid detection of human pathogenic orthobunyaviruses

J Clin Microbiol. 2003 Jul;41(7):3299-305. doi: 10.1128/JCM.41.7.3299-3305.2003.

Abstract

Modern detection and identification tools can help to provide answers to urgent questions about the incidence, prevalence, and epidemiology of currently emerging diseases. We developed highly sensitive one-step TaqMan reverse transcription-PCR assays with sensitivities ranging from 10(4) to 10(1) molecules for 11 human pathogens of the orthobunyaviruses. We compared the performances of these assays on three currently available cyclers (ABI-PRISM 7700, LightCycler, and SmartCycler). The assay for Oropouche virus (OROV) was tested using sera collected from days 1 to 5 after onset of OROV disease and was found to be greatly superior to an established nested PCR system. A mean copy number of 1.31 x 10(7) OROV RNA/ml of serum was detected. Diagnostic RNA detection can be used as early as day 1 after onset of OROV disease. The use of a mobile SmartCycler and a hands-on time of less than 3 h could help to intensify outbreak surveillance and control, especially in field studies.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bunyaviridae / classification
  • Bunyaviridae / genetics
  • Bunyaviridae / growth & development
  • Bunyaviridae / isolation & purification*
  • Bunyaviridae Infections / diagnosis*
  • Bunyaviridae Infections / virology
  • Cell Line
  • Chlorocebus aethiops
  • DNA Primers
  • Humans
  • RNA, Viral / blood
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Sensitivity and Specificity
  • Simbu virus / classification
  • Simbu virus / genetics
  • Simbu virus / growth & development
  • Simbu virus / isolation & purification
  • Taq Polymerase
  • Time Factors
  • Vero Cells

Substances

  • DNA Primers
  • RNA, Viral
  • Taq Polymerase