Chip and solution detection of DNA hybridization using a luminescent zwitterionic polythiophene derivative

Nat Mater. 2003 Jun;2(6):419-24. doi: 10.1038/nmat899.

Abstract

Electronic polymers in aqueous media may offer bioelectronic detection of biospecific interactions. Here we report a fluorometric DNA hybridization detection method based on non-covalent coupling of DNA to a water-soluble zwitterionic polythiophene derivative. Introduction of a single-stranded oligonucleotide will induce a planar polymer and aggregation of the polymer chains, detected as a decrease of the intensity and a red-shift of the fluorescence. On addition of a complementary oligonucleotide, the intensity of the emitted light is increased and blue-shifted. The detection limit of this method is at present approximately 10(-11) moles. The method is highly sequence specific, and a single-nucleotide mismatch can be detected within five minutes without using any denaturation steps. The interaction with DNA and the optical phenomena persists when the polymer is deposited and patterned on a surface. This offers a novel way to create DNA chips without using covalent attachment of the receptor or labelling of the analyte.

Publication types

  • Evaluation Study

MeSH terms

  • DNA / analysis*
  • DNA / chemistry
  • In Situ Hybridization, Fluorescence / methods
  • Luminescent Measurements
  • Nucleic Acid Hybridization / methods*
  • Oligonucleotide Array Sequence Analysis / instrumentation
  • Oligonucleotide Array Sequence Analysis / methods*
  • Polymers / chemistry*
  • Thiophenes / chemistry*

Substances

  • Polymers
  • Thiophenes
  • polythiophene
  • DNA