Comparison of potassium ion preference of potassium-sensing oligonucleotides, PSO-1 and PSO-2, carrying the human and Oxytricha telomeric sequence, respectively

Anal Bioanal Chem. 2003 Apr;375(8):1006-10. doi: 10.1007/s00216-003-1799-z. Epub 2003 Mar 20.

Abstract

Human [G(3)(TTAG(3))(3)] and Oxytricha [G(4)(T(4)G(4))(3)] telomere model oligonucleotides, PSO-1 and PSO-2, bearing two fluorophores, 6-carboxyfluorescein (6-FAM) and 6-carboxytetramethylrhodamine (6-TAMRA) at their 5'- and 3'-termini, respectively, were synthesized. Both of them can form an intramolecular antiparallel tetraplex upon addition of K(+), and an enhanced fluorescence resonance energy transfer (FRET) was observed. PSO-1 showed a 43,000 times higher selectivity for K(+) against Na(+). Fluorometric and circular dichroism spectrophotometric studies revealed that this system is useful for the evaluation of the interaction of different telomeric repeat oligonucleotide sequences with metal ions.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Biosensing Techniques*
  • Circular Dichroism
  • Fluorescence Resonance Energy Transfer
  • Humans
  • Ions / metabolism
  • Molecular Sequence Data
  • Molecular Structure
  • Nucleic Acid Conformation
  • Oligonucleotides / chemistry
  • Oligonucleotides / genetics*
  • Oligonucleotides / metabolism*
  • Oxytricha / genetics*
  • Potassium / metabolism*
  • Sodium / metabolism
  • Telomere / genetics*

Substances

  • Ions
  • Oligonucleotides
  • Sodium
  • Potassium