Client-server environment for high-performance gene expression data analysis

Alexander Sturn; Bernhard Mlecnik; Roland Pieler; Johannes Rainer; Thomas Truskaller; Zlatko Trajanoski

doi:10.1093/bioinformatics/btg074

Client-server environment for high-performance gene expression data analysis

Bioinformatics. 2003 Apr 12;19(6):772-3. doi: 10.1093/bioinformatics/btg074.

Authors

Alexander Sturn¹, Bernhard Mlecnik, Roland Pieler, Johannes Rainer, Thomas Truskaller, Zlatko Trajanoski

Affiliation

¹ Institute of Biomedical Engineering, Graz University of Technology, Christian Doppler Laboratory for Genomics and Bioinformatics, Krenngasse 37, 8010 Graz, Austria.

PMID: 12691990
DOI: 10.1093/bioinformatics/btg074

Abstract

We have developed a platform independent, flexible and scalable Java environment for high-performance large-scale gene expression data analysis, which integrates various computational intensive hierarchical and non-hierarchical clustering algorithms. The environment includes a powerful client for data preparation and results visualization, an application server for computation and an additional administration tool. The package is available free of charge for academic and non-profit institutions.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Computing Methodologies*
Gene Expression Profiling / instrumentation*
Gene Expression Profiling / methods*
Hypermedia*
Information Storage and Retrieval / methods*
Oligonucleotide Array Sequence Analysis / instrumentation*
Oligonucleotide Array Sequence Analysis / methods*
Sequence Analysis, DNA / instrumentation
Sequence Analysis, DNA / methods
Software