Discovery of a potent small molecule IL-2 inhibitor through fragment assembly

J Am Chem Soc. 2003 Apr 2;125(13):3714-5. doi: 10.1021/ja034247i.

Abstract

Using a site-directed fragment discovery method called tethering, we have identified a 60 nM small molecule antagonist of a cytokine/receptor interaction (IL-2/IL2Ralpha) with cell-based activity. Starting with a low micromolar hit, we employed a combination of tethering, structural biology, and computational analysis to design a focused set of 20 compounds. Eight of these compounds were at least 5-fold more active than the original hit. One of these compounds showed a 50-fold enhancement and represents the highest affinity inhibitor reported against this protein-protein target class. This method of coupling selected fragments with a low micromolar hit shows great potential for generating high-affinity lead compounds.

MeSH terms

  • Alkynes / chemistry
  • Alkynes / pharmacology
  • Drug Design
  • Interleukin-2 / antagonists & inhibitors*
  • Interleukin-2 / chemistry*
  • Interleukin-2 / metabolism
  • Interleukin-2 Receptor alpha Subunit
  • Kinetics
  • Models, Molecular
  • Peptide Fragments / chemistry*
  • Piperidines / chemistry
  • Piperidines / pharmacology
  • Protein Conformation
  • Receptors, Interleukin / agonists
  • Structure-Activity Relationship

Substances

  • Alkynes
  • Interleukin-2
  • Interleukin-2 Receptor alpha Subunit
  • Peptide Fragments
  • Piperidines
  • Receptors, Interleukin
  • Ro26-4550