Determination of protein global folds using backbone residual dipolar coupling and long-range NOE restraints

J Biomol NMR. 2003 Jan;25(1):63-71. doi: 10.1023/a:1021954812977.

Abstract

We report the determination of the global fold of human ubiquitin using protein backbone NMR residual dipolar coupling and long-range nuclear Overhauser effect (NOE) data as conformational restraints. Specifically, by use of a maximum of three backbone residual dipolar couplings per residue (Ni-H N i, Ni-C'(i-1), H N i - C'(i-1)) in two tensor frames and only backbone H N -H N NOEs, a global fold of ubiquitin can be derived with a backbone root-mean-square deviation of 1.4 A with respect to the crystal structure. This degree of accuracy is more than adequate for use in databases of structural motifs, and suggests a general approach for the determination of protein global folds using conformational restraints derived only from backbone atoms.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Humans
  • Magnetics
  • Nuclear Magnetic Resonance, Biomolecular / methods*
  • Protein Structure, Tertiary
  • Proteins / chemistry
  • Ubiquitin / chemistry*

Substances

  • Proteins
  • Ubiquitin