Conformational features of human melanin-concentrating hormone: an NMR and computational analysis

Chembiochem. 2003 Jan 3;4(1):73-81. doi: 10.1002/cbic.200390017.

Abstract

The conformational features of human melanin-concentrating hormone (hMCH) [Asp1-Phe2-Asp3-Met4-Leu5-Arg6-cyclo(S[bond]S)(Cys7-Met8-Leu9-Gly10-Arg11-Val12-Tyr13-Arg14-Pro15-Cys16)-Trp17-Gln18-Val19], in water and in a CD(3)CN/H(2)O (1:1 v/v) mixture at 298 K, have been determined by NMR spectroscopy followed by simulated annealing and molecular dynamics analyses to identify conformer populations. Backbone clustering analysis of NMR-spectroscopy-derived structures in the 7-16 peptide region led to the identification of a single representative structure in each solvent. Both root mean square deviation clustering and secondary structure analysis of the final conformers in both solvents show substantial convergence of most conformers into a single fold in the 4-17 region, with a limited variability around Gly10 and Tyr13 on going from CD(3)CN/H(2)O to pure water. The main feature deduced from the analysis of secondary structures is the occurrence of an N-terminal alpha helix of variable length, which spans an overall residue range of 2-9. A comparative analysis in the two solvents highlights that these structures are substantially different from that reported in the literature for the cyclic MCH(5-14) subunit of salmon MCH, which was used to perform a molecular characterization of the MCH/receptor complex. Our conformational data call for a critical revision of the proposed MCH/receptor complex model.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Circular Dichroism
  • Computational Biology
  • Humans
  • Hydrogen Bonding
  • Hypothalamic Hormones / chemistry*
  • Magnetic Resonance Spectroscopy
  • Melanins / chemistry*
  • Models, Molecular
  • Molecular Sequence Data
  • Pituitary Hormones / chemistry*
  • Protein Conformation
  • Solvents

Substances

  • Hypothalamic Hormones
  • Melanins
  • Pituitary Hormones
  • Solvents
  • melanin-concentrating hormone