Structure of the LDL receptor extracellular domain at endosomal pH

Science. 2002 Dec 20;298(5602):2353-8. doi: 10.1126/science.1078124. Epub 2002 Nov 29.

Abstract

The low-density lipoprotein receptor mediates cholesterol homeostasis through endocytosis of lipoproteins. It discharges its ligand in the endosome at pH < 6. In the crystal structure at pH = 5.3, the ligand-binding domain (modules R2 to R7) folds back as an arc over the epidermal growth factor precursor homology domain (the modules A, B, beta propeller, and C). The modules R4 and R5, which are critical for lipoprotein binding, associate with the beta propeller via their calcium-binding loop. We propose a mechanism for lipoprotein release in the endosome whereby the beta propeller functions as an alternate substrate for the ligand-binding domain, binding in a calcium-dependent way and promoting lipoprotein release.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Calcium / metabolism
  • Crystallization
  • Crystallography, X-Ray
  • Endosomes / metabolism*
  • Epidermal Growth Factor / chemistry
  • Humans
  • Hydrogen-Ion Concentration
  • Hydrophobic and Hydrophilic Interactions
  • Ligands
  • Lipoproteins, LDL / metabolism*
  • Models, Biological
  • Models, Molecular
  • Mutation
  • Protein Binding
  • Protein Conformation
  • Protein Folding
  • Protein Precursors / chemistry
  • Protein Structure, Secondary
  • Protein Structure, Tertiary*
  • Receptors, LDL / chemistry*
  • Receptors, LDL / genetics
  • Receptors, LDL / metabolism*
  • Repetitive Sequences, Amino Acid

Substances

  • Ligands
  • Lipoproteins, LDL
  • Protein Precursors
  • Receptors, LDL
  • VLDL receptor
  • Epidermal Growth Factor
  • Calcium

Associated data

  • PDB/1N7D