Domain V of m-calpain shows the potential to form an oblique-orientated alpha-helix, which may modulate the enzyme's activity via interactions with anionic lipid

Eur J Biochem. 2002 Nov;269(22):5414-22. doi: 10.1046/j.1432-1033.2002.03225.x.

Abstract

The activity of m-calpain, a heterodimeric, Ca2+-dependent cysteine protease appears to be modulated by membrane interactions involving oblique-orientated alpha-helix formation by a segment, GTAMRILGGVI, in the protein's smaller subunit. Here, graphical and hydrophobic moment-based analyses predicted that this segment may form an alpha-helix with strong structural resemblance to the influenza virus peptide, HA2, a known oblique-orientated alpha-helix former. Fourier transform infrared spectroscopy showed that a peptide homologue of the GTAMRILGGVI segment, VP1, adopted low levels of alpha-helical structure ( approximately 20%) in the presence of zwitterionic lipid and induced a minor decrease (3 degrees C) in the gel to liquid-crystalline phase transition temperature, TC, of the hydrocarbon chains of zwitterionic membranes, suggesting interaction with the lipid headgroup region. In contrast, VP1 adopted high levels of alpha-helical structure (65%) in the presence of anionic lipid, induced a large increase (10 degrees C) in the TC of anionic membranes, and showed high levels of anionic lipid monolayer penetration (DeltaSP = 5.5 mN.m-1), suggesting deep levels of membrane penetration. VP1 showed strong haemolytic ability (LD50 = 1.45 mm), but in the presence of ionic agents, this ability, and that of VP1 to penetrate anionic lipid monolayers, was greatly reduced. In combination, our results suggest that m-calpain domain V may penetrate membranes via the adoption of an oblique-orientated alpha-helix and electrostatic interactions. We speculate that these interactions may involve snorkelling by an arginine residue located in the polar face of this alpha-helix.

MeSH terms

  • Amino Acid Sequence
  • Calcium / metabolism
  • Calpain / chemistry*
  • DNA-Binding Proteins / metabolism
  • Dimerization
  • Dose-Response Relationship, Drug
  • Hemagglutinins / chemistry
  • Ions
  • Lectins
  • Lipids / chemistry*
  • Molecular Sequence Data
  • Peptide Fragments / chemistry
  • Peptides / chemistry
  • Plant Proteins
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Spectroscopy, Fourier Transform Infrared
  • Temperature
  • Time Factors
  • Trans-Activators
  • Transcription Factors / metabolism
  • Viral Proteins

Substances

  • DNA-Binding Proteins
  • Hemagglutinins
  • Ions
  • Lectins
  • Lipids
  • Peptide Fragments
  • Peptides
  • Plant Proteins
  • Trans-Activators
  • Transcription Factors
  • Viral Proteins
  • influenza virus-hemagglutinin peptide 2 (1-48)
  • Calpain
  • m-calpain
  • Calcium