Promiscuity in ligand-binding: The three-dimensional structure of a Piromyces carbohydrate-binding module, CBM29-2, in complex with cello- and mannohexaose

Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14077-82. doi: 10.1073/pnas.212516199. Epub 2002 Oct 21.

Abstract

Carbohydrate-protein recognition is central to many biological processes. Enzymes that act on polysaccharide substrates frequently contain noncatalytic domains, "carbohydrate-binding modules" (CBMs), that target the enzyme to the appropriate substrate. CBMs that recognize specific plant structural polysaccharides are often able to accommodate both the variable backbone and the side-chain decorations of heterogeneous ligands. "CBM29" modules, derived from a noncatalytic component of the Piromyces equi cellulase/hemicellulase complex, provide an example of this selective yet flexible recognition. They discriminate strongly against some polysaccharides while remaining relatively promiscuous toward both beta-1,4-linked manno- and cello-oligosaccharides. This feature may reflect preferential, but flexible, targeting toward glucomannans in the plant cell wall. The three-dimensional structure of CBM29-2 and its complexes with cello- and mannohexaose reveal a beta-jelly-roll topology, with an extended binding groove on the concave surface. The orientation of the aromatic residues complements the conformation of the target sugar polymer while accommodation of both manno- and gluco-configured oligo- and polysaccharides is conferred by virtue of the plasticity of the direct interactions from their axial and equatorial 2-hydroxyls, respectively. Such flexible ligand recognition targets the anaerobic fungal complex to a range of different components in the plant cell wall and thus plays a pivotal role in the highly efficient degradation of this composite structure by the microbial eukaryote.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Carbohydrate Sequence
  • Carbohydrates
  • Cellulase / chemistry*
  • Cellulase / genetics
  • Crystallography, X-Ray / methods
  • Fungal Proteins / chemistry*
  • Fungal Proteins / genetics
  • Galactose / analogs & derivatives
  • Glycoside Hydrolases / chemistry
  • Glycoside Hydrolases / genetics
  • Ligands
  • Mannans / chemistry
  • Models, Molecular
  • Molecular Sequence Data
  • Oligosaccharides / chemistry*
  • Piromyces / enzymology
  • Protein Structure, Tertiary
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Substrate Specificity

Substances

  • Carbohydrates
  • Fungal Proteins
  • Ligands
  • Mannans
  • NCP1 protein, Piromyces equi
  • Oligosaccharides
  • Recombinant Fusion Proteins
  • galactomannan
  • cellohexaose
  • (1-6)-alpha-glucomannan
  • mannopentaose
  • Glycoside Hydrolases
  • hemicellulase
  • Cellulase
  • Galactose

Associated data

  • PDB/1GWK
  • PDB/1GWL
  • PDB/1GWM