Exact solution of the Muñoz-Eaton model for protein folding

Phys Rev Lett. 2002 Jun 24;88(25 Pt 1):258101. doi: 10.1103/PhysRevLett.88.258101. Epub 2002 Jun 6.

Abstract

A transfer-matrix formalism is introduced to evaluate exactly the partition function of the Muñoz-Eaton model, relating the folding kinetics of proteins of known structure to their thermodynamics and topology. This technique can be used for a generic protein, for any choice of the energy and entropy parameters, and in principle allows the model to be used as a first tool to characterize the dynamics of a protein of known native state and equilibrium population. Applications to a beta-hairpin and to protein CI-2, with comparisons to previous results, are also shown.

MeSH terms

  • Models, Chemical*
  • Peptides / chemistry
  • Plant Proteins
  • Protein Folding*
  • Protein Structure, Secondary
  • Thermodynamics

Substances

  • Peptides
  • Plant Proteins
  • chymotrypsin inhibitor 2