A unique unnatural base pair between a C analogue, pseudoisocytosine, and an A analogue, 6-methoxypurine, in replication

Bioorg Med Chem Lett. 2002 May 20;12(10):1391-3. doi: 10.1016/s0960-894x(02)00184-1.

Abstract

Pseudoisocytidine, a C-nucleoside analogue of cytosine, has two possible isomers of the H1- and H3-forms. Enzymatic incorporation experiments confirmed the existence of the two isomers in solution, and the 2'-deoxyribonucleoside triphosphate of pseudoisocytosine (PIC) was incorporated into DNA opposite both guanine and 6-methoxypurine (M) by the Klenow fragment of Escherichia coli DNA polymerase I. In addition to the PIC*M pairing in replication, M also functioned as an A analogue and T was efficiently incorporated opposite M. Thus, the PIC*M pair is regarded as a base pair between a C analogue and an A analogue, and can mediate the interconversion between the G*C and A*T base pairs. The combination of PIC and M could be used as a G*C<-->A*T transition mutagen.

MeSH terms

  • Adenosine / analogs & derivatives*
  • Adenosine / chemical synthesis
  • Adenosine / pharmacology
  • Base Pairing*
  • Base Sequence
  • Cytidine / analogs & derivatives*
  • Cytidine / chemical synthesis
  • Cytidine / pharmacology
  • DNA Polymerase I / metabolism
  • DNA Primers
  • DNA Replication / drug effects*
  • Escherichia coli / enzymology
  • Lactones / chemical synthesis*
  • Lactones / pharmacology
  • Models, Molecular
  • Molecular Conformation
  • Templates, Genetic

Substances

  • DNA Primers
  • Lactones
  • madurahydroxylactone
  • Cytidine
  • DNA Polymerase I
  • Adenosine