Interaction of an acridine dimer with DNA quadruplex structures

J Biomol Struct Dyn. 2001 Dec;19(3):505-13. doi: 10.1080/07391102.2001.10506758.

Abstract

The reactivation of telomerase activity in most cancer cells supports the concept that telomerase is a relevant target in oncology, and telomerase inhibitors have been proposed as new potential anticancer agents. The telomeric G-rich single-stranded DNA can adopt an intramolecular G-quadruplex structure in vitro, which has been shown to inhibit telomerase activity. The C-rich sequence can also adopt a quadruplex (intercalated) structure (i-DNA). Two acridine derivatives were shown to increase the melting temperature of the G- quadruplex and the C-quadruplex at 1 microM dye concentration. The increase in Tm value of the G-quadruplex was associated with telomerase inhibition in vitro. The most active compound, "BisA", showed an IC(50) value of 0.75 microM in a standard TRAP assay.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Acridines / chemistry
  • Acridines / metabolism*
  • Binding Sites
  • Bridged-Ring Compounds / chemistry
  • Bridged-Ring Compounds / metabolism*
  • Cytosine / chemistry
  • DNA / chemistry
  • DNA / metabolism*
  • DNA, Single-Stranded / chemistry
  • Dimerization
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / metabolism*
  • Fluorescence
  • Fluorescent Dyes / metabolism
  • G-Quadruplexes
  • Guanine / chemistry
  • Humans
  • Kinetics
  • Ligands
  • Nucleic Acid Conformation
  • Oligonucleotides / chemistry
  • Rhodamines / metabolism
  • Spectrometry, Fluorescence / methods
  • Telomerase / metabolism*
  • Telomere / chemistry
  • Temperature

Substances

  • Acridines
  • BisA compound
  • Bridged-Ring Compounds
  • DNA, Single-Stranded
  • Enzyme Inhibitors
  • Fluorescent Dyes
  • Ligands
  • MonoA compound
  • Oligonucleotides
  • Rhodamines
  • Guanine
  • Cytosine
  • DNA
  • Telomerase