Although studies of freshwater entomofauna frequently do not include the biodiversity and ecological roles of higher Diptera, cyclorraphous flies are often numerous and species rich in wetlands. Seventeen families are commonly found in freshwater wetlands, with Ephydridae, Chloropidae, Sciomyzidae, Sphaeroceridae, and Scathophagidae being among the most important in terms of population size and species richness. Difficulty with sampling cryptic larval habitats and species identification challenges may account for the exclusion of acalyptrate and other dipterans from wetlands ecology studies. Large populations are facilitated by the high productivity of freshwater wetlands and the high intrinsic rate of increase characteristic of many species. Higher dipterans exist in all freshwater wetland types, are microhabitat selective, and play significant roles in food webs. The varied strategies for food acquisition and patterns of spatial and temporal distribution limit ecological overlap among the higher Diptera.