Allosteric transition and substrate binding are entropy-driven in glucosamine-6-phosphate deaminase from Escherichia coli

Arch Biochem Biophys. 2001 Oct 15;394(2):156-60. doi: 10.1006/abbi.2001.2523.

Abstract

Glucosamine-6P-deaminase (EC 3.5.99.6, formerly glucosamine-6-phosphate isomerase, EC 5.3.1.10) from Escherichia coli is an attractive experimental model for the study of allosteric transitions because it is both kinetically and structurally well-known, and follows rapid equilibrium random kinetics, so that the kinetic K(m) values are true thermodynamic equilibrium constants. The enzyme is a typical allosteric K-system activated by N-acetylglucosamine 6-P and displays an allosteric behavior that can be well described by the Monod-Wyman-Changeux model. This thermodynamic study based on the temperature dependence of allosteric parameters derived from this model shows that substrate binding and allosteric transition are both entropy-driven processes in E. coli GlcN6P deaminase. The analysis of this result in the light of the crystallographic structure of the enzyme implicates the active-site lid as the structural motif that could contribute significantly to this entropic component of the allosteric transition because of the remarkable change in its crystallographic B factors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylglucosamine / analogs & derivatives*
  • Acetylglucosamine / metabolism
  • Aldose-Ketose Isomerases / chemistry*
  • Aldose-Ketose Isomerases / metabolism
  • Allosteric Regulation / physiology
  • Binding Sites / physiology
  • Entropy*
  • Escherichia coli / enzymology*
  • Models, Chemical
  • Protein Binding / physiology
  • Protein Conformation
  • Structure-Activity Relationship
  • Substrate Specificity / physiology
  • Temperature
  • Thermodynamics

Substances

  • N-acetylglucosamine 6-phosphate
  • glucosamine-6-phosphate isomerase
  • Aldose-Ketose Isomerases
  • Acetylglucosamine