Temperature-dependent helix-coil transition of an alanine based peptide

J Am Chem Soc. 2001 Sep 26;123(38):9235-8. doi: 10.1021/ja0158814.

Abstract

The helix-coil transition of a synthetic alpha-helical peptide (the D-Arg peptide), Ac-YGG(KAAAA)(3)-CO-D-Arg-CONH(2), was studied by static far-UV circular dichroism (CD) and time-resolved infrared spectroscopy coupled with the laser-induced temperature-jump technique for rapid relaxation initiation. Equilibrium thermal unfolding measurements of the D-Arg peptide monitored by CD spectroscopy reveal an apparent two-state helix-coil transition, with a thermal melting temperature around 10 degrees C. Time-resolved infrared (IR) measurements following a laser-induced temperature jump, however, reveal biphasic (or multiphasic) relaxation kinetics. The fast phase rises within the 20 ns response time of the detection system. The slow phase has a decay lifetime of approximately 140 ns at 300 K and exhibits monotonic temperature dependence with an apparent activation energy around 15.5 kcal/mol.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alanine / chemistry*
  • Arginine / chemistry
  • Circular Dichroism
  • Kinetics
  • Peptides / chemistry*
  • Protein Folding*
  • Protein Structure, Secondary
  • Spectroscopy, Fourier Transform Infrared
  • Temperature

Substances

  • Peptides
  • polyalanine
  • Arginine
  • Alanine