Platination of the (T2G4)4 telomeric sequence: a structural and cross-linking study

Biochemistry. 2001 Jul 24;40(29):8463-70. doi: 10.1021/bi001565a.

Abstract

The telomeric sequence (T(2)G(4))(4) was platinated in aqueous solutions containing 50 mM LiClO(4), NaClO(4), or KClO(4). The identification of the guanines which reacted with [Pt(NH(3))(3)(H(2)O)](2+) revealed that the same type of folding exists in the presence of the three cations and that the latter determine the relative stabilities of the G-quadruplex structures in the order K(+) > Na(+) >> Li(+). The tri-ammine complex yielded ca. 40--90% of adducts, mono- and poly-platinated, bound to 4 guanines out of the 16 guanines in the sequence, in the decreasing amounts G9 > G15 >> G3 > G21. The formation of these adducts was interpreted with a G-quadruplex structure obtained by restrained molecular dynamics (rMD) simulations which confirms the schematic model proposed by Williamson et al. [(1989) Cell 59, 871--880]. The bifunctional complexes cis- and trans-[Pt(NH(3))(2)(H(2)O)(2)](2+) also first reacted with G9 and G15 and gave cross-linked adducts between two guanines, which did not exceed 5% each of the products formed. Both the cis and trans isomers formed a G3-G15 platinum chelate, and the second also formed bis-chelates at both ends of the G-quadruplex structure: G3-G15/G9-G21 and G3-G15/G9-G24. The rMD simulations showed that the cross-linking reactions by the trans complex can occur without disturbing the stacking of the three G-quartets.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cisplatin / chemistry*
  • Cross-Linking Reagents / chemistry*
  • DNA / chemistry
  • G-Quadruplexes
  • Guanine / chemistry
  • Lithium Compounds / chemistry
  • Nucleic Acid Conformation
  • Nucleic Acid Denaturation
  • Oligonucleotides / chemistry
  • Perchlorates / chemistry
  • Potassium Compounds / chemistry
  • Sodium Compounds / chemistry
  • Telomere / chemistry*
  • Thermodynamics

Substances

  • Cross-Linking Reagents
  • Lithium Compounds
  • Oligonucleotides
  • Perchlorates
  • Potassium Compounds
  • Sodium Compounds
  • potassium perchlorate
  • Guanine
  • DNA
  • sodium perchlorate
  • Cisplatin
  • lithium perchlorate