A 72-base pair AT-rich DNA sequence element functions as a bacterial gene silencer

J Biol Chem. 2001 Mar 23;276(12):9478-85. doi: 10.1074/jbc.M010501200. Epub 2000 Dec 19.

Abstract

We have previously demonstrated that sequential activation of the bacterial ilvIH-leuO-leuABCD gene cluster involves a promoter-relay mechanism. In the current study, we show that the final activation of the leuABCD operon is through a transcriptional derepression mechanism. The leuABCD operon is transcriptionally repressed by the presence of a 318-base pair AT-rich upstream element. LeuO is required for derepressing the repressed leuABCD operon. Deletion analysis of the repressive effect of the 318-bp element has led to the identification of a 72-bp AT-rich (78% A+T) DNA sequence element, AT4, which is capable of silencing a number of unrelated promoters in addition to the leuABCD promoter. AT4-mediated gene silencing is orientation-independent and occurs within a distance of 300 base pairs. Furthermore, an increased gene-silencing effect was observed with a tandemly repeated AT4 dimer. The possible mechanism of AT4-mediated gene silencing in bacteria is discussed.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Pairing
  • Base Sequence
  • DNA Primers
  • DNA, Bacterial / genetics*
  • Gene Silencing*
  • Molecular Sequence Data
  • Operon
  • Promoter Regions, Genetic
  • Salmonella typhimurium / genetics*

Substances

  • DNA Primers
  • DNA, Bacterial

Associated data

  • GENBANK/AF106955
  • GENBANK/AF106956