HLA-A*2416: a new allele of the HLA-A19 lineage

Tissue Antigens. 2000 Feb;55(2):178-81. doi: 10.1034/j.1399-0039.2000.550213.x.

Abstract

We here report on a new HLA-A19 allele (A*2416) found in a German kidney recipient. Serological class I typing revealed HLA-A11,19 without clear definition of the A19 split antigen. As with serology, polymerase chain reaction (PCR)-based typing also revealed inconclusive results. We therefore sequenced the gene from the 5' flanking region through the 3'-end of exon 4 of this allele after haplotype-specific PCR amplification. The sequence analysis revealed a new HLA-A allele which is identical to A*3101 with the exception of the 3' half of exon 2 which is identical to the common A9 alleles. The phylogenetic analysis constructed with the nearest-neighbor algorithm and based on exons 1-4 or introns 1-3 clearly indicated, that A*2416 belongs unequivocally to the A19 lineage.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles*
  • Base Sequence
  • DNA, Complementary
  • HLA-A Antigens / classification
  • HLA-A Antigens / genetics*
  • Humans
  • Molecular Sequence Data

Substances

  • DNA, Complementary
  • HLA-A Antigens
  • HLA-A19 antigen

Associated data

  • GENBANK/AJ011699
  • GENBANK/AJ011700
  • GENBANK/AJ012384
  • GENBANK/AJ245729