Fusion protein predicted amino acid sequence of the first US avian pneumovirus isolate and lack of heterogeneity among other US isolates

Virus Res. 2000 Feb;66(2):139-47. doi: 10.1016/s0168-1702(99)00133-1.

Abstract

Avian pneumovirus (APV) was first isolated from turkeys in the west-central US following emergence of turkey rhinotracheitis (TRT) during 1996. Subsequently, several APV isolates were obtained from the north-central US. Matrix (M) and fusion (F) protein genes of these isolates were examined for sequence heterogeneity and compared with European APV subtypes A and B. Among US isolates the M gene shared greater than 98% nucleotide sequence identity with only one nonsynonymous change occurring in a single US isolate. Although the F gene among US APV isolates shared 98% nucleotide sequence identity, nine conserved substitutions were detected in the predicted amino acid sequence. The predicted amino acid sequence of the US APV isolate's F protein had 72% sequence identity to the F protein of APV subtype A and 71% sequence identity to the F protein of APV subtype B. This compares with 83% sequence identity between the APV subtype A and B predicted amino acid sequences of the F protein. The US isolates were phylogenetically distinguishable from their European counterparts based on F gene nucleotide or predicted amino acid sequences. Lack of sequence heterogeneity among US APV subtypes indicates these viruses have maintained a relatively stable population since the first outbreak of TRT. Phylogenetic analysis of the F protein among APV isolates supports classification of US isolates as a new APV subtype C.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Animals
  • Cloning, Molecular
  • Consensus Sequence
  • Europe
  • Genes, Viral*
  • Molecular Sequence Data
  • Phylogeny
  • Pneumovirus / chemistry
  • Pneumovirus / classification
  • Pneumovirus / genetics*
  • Pneumovirus Infections / veterinary*
  • Poultry Diseases / virology*
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Turkeys / virology*
  • United States
  • Viral Fusion Proteins / genetics*

Substances

  • Viral Fusion Proteins

Associated data

  • GENBANK/AF187149
  • GENBANK/AF187150
  • GENBANK/AF187151
  • GENBANK/AF187152
  • GENBANK/AF187153
  • GENBANK/AF187154