Studies on the reaction mechanism of Rhodotorula gracilis D-amino-acid oxidase. Role of the highly conserved Tyr-223 on substrate binding and catalysis

J Biol Chem. 1999 Dec 17;274(51):36233-40. doi: 10.1074/jbc.274.51.36233.

Abstract

We have studied D-amino-acid oxidase from Rhodotorula gracilis by site-directed mutagenesis for the purpose of determining the presence or absence of residues having a possible role in acid/base catalysis. Tyr-223, one of the very few conserved residues among D-amino-acid oxidases, has been mutated to phenylalanine and to serine. Both mutants are active catalysts in turnover with D-alanine, and they are reduced by D-alanine slightly faster than wild-type enzyme. The Tyr-223 --> Phe mutant is virtually identical to the wild-type enzyme, whereas the Tyr-223 --> Ser mutant exhibits 60-fold slower substrate binding and at least 800-fold slower rate of product release relative to wild-type. These data eliminate Tyr-223 as an active-site acid/base catalyst. These results underline the importance of Tyr-223 for substrate binding and exemplify the importance of steric interactions in RgDAAO catalysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites / genetics
  • Catalysis
  • Conserved Sequence
  • D-Amino-Acid Oxidase / chemistry
  • D-Amino-Acid Oxidase / genetics
  • D-Amino-Acid Oxidase / metabolism*
  • Kinetics
  • Mutagenesis, Site-Directed
  • Rhodotorula
  • Structure-Activity Relationship
  • Substrate Specificity
  • Tyrosine

Substances

  • Tyrosine
  • D-Amino-Acid Oxidase