Restriction site insertion-PCR (RSI-PCR) for rapid discrimination and typing of closely related microbial strains

FEMS Microbiol Lett. 1999 Nov 1;180(1):77-83. doi: 10.1111/j.1574-6968.1999.tb08780.x.

Abstract

Taking advantage of point mutations between DNA sequences of closely related microbial strains, PCR primers modified with respect to the target sequence at positions 2-5 near the 3' end were designed to obtain a fragment harbouring an artificial restriction site specific for a given strain. The modified forward primer coupled with a specific reverse primer allows for the amplification of DNA fragments which can be digested with the specific endonuclease only in those strains where the restriction site is inserted by the DNA polymerase. The effectiveness of the method, named restriction site insertion-PCR (RSI-PCR), was tested on isolates of the 'Bacillus cereus group' for the rapid typing and discrimination of these closely related strains.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillus cereus / classification
  • Bacillus cereus / genetics
  • Bacterial Typing Techniques*
  • DNA Primers / genetics
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Feasibility Studies
  • Point Mutation
  • Polymerase Chain Reaction / methods*
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • RNA, Ribosomal, 23S / genetics
  • Species Specificity

Substances

  • DNA Primers
  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • RNA, Ribosomal, 23S