Biodiversity in deep-sea sites located near the south part of Japan

Extremophiles. 1999 May;3(2):97-102. doi: 10.1007/s007920050104.

Abstract

We obtained 100 isolates of bacteria from deep-sea mud samples collected at various depths (1050-10897m). Various types of bacteria such as alkaliphiles, thermophiles, psychrophiles, and halophiles were recovered on agar plates at a frequency of 0.8 x 10(2) to 2.3 x 10(4)/ g of dry sea mud. No acidophiles were recovered. These extremophilic bacteria were widely distributed, being detected at each deep-sea site, and the frequency of isolation of such extremophiles from the deep-sea mud was not directly influenced by the depth of the sampling sites. Phylogenetic analysis of deep-sea isolates based on 16S rDNA sequences revealed that a wide range of taxa were represented in the deep-sea environments. Growth patterns under high hydrostatic pressure were determined for the deep-sea isolates obtained in this study. No extremophilic strains isolated in this study showed growth at 60MPa, although a few of the other isolates grew slightly at this hydrostatic pressure.

MeSH terms

  • Bacteria / classification*
  • Bacteria / genetics
  • Bacteria / growth & development
  • Bacteria / isolation & purification
  • Base Sequence
  • DNA, Bacterial
  • DNA, Ribosomal / analysis
  • Japan
  • Molecular Sequence Data
  • Pacific Ocean
  • Pressure
  • RNA, Ribosomal, 16S
  • Sequence Analysis, DNA
  • Water Microbiology*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/AB010842
  • GENBANK/AB010843
  • GENBANK/AB010845
  • GENBANK/AB010846
  • GENBANK/AB010847
  • GENBANK/AB010848
  • GENBANK/AB010850
  • GENBANK/AB010851
  • GENBANK/AB010852
  • GENBANK/AB010853
  • GENBANK/AB010854
  • GENBANK/AB010858
  • GENBANK/AB010859
  • GENBANK/AB010860
  • GENBANK/AB010861
  • GENBANK/AB010862
  • GENBANK/AB010863
  • GENBANK/AB010864
  • GENBANK/AB010865
  • GENBANK/AB010866
  • GENBANK/AB010867
  • GENBANK/AB010868
  • GENBANK/AB010869
  • GENBANK/AB010870