Determination of the secondary structural elements of chicken liver fatty acid binding protein by two-dimensional homonuclear NMR

Biopolymers. 1999 Jul;50(1):1-11. doi: 10.1002/(SICI)1097-0282(199907)50:1<1::AID-BIP1>3.0.CO;2-V.

Abstract

A conformational study in solution of the fatty acid binding protein from chicken liver is presented. The nearly complete sequence-specific 1H resonance assignment was achieved from homonuclear two-dimensional nmr experiments using a sample of native protein. The principal elements of secondary structure were identified: 10 antiparallel beta-strands and one helical segment followed by a turn comprising 5 residues. These elements correspond closely with those of the crystal structure of the related protein, and two new secondary structural features obtained from the nmr data are the beta-sheet conformation between the first and the last beta-strand in the protein sequence, as well as a helical loop at the N-terminus of the polypeptide chain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Carrier Proteins / chemistry*
  • Carrier Proteins / genetics
  • Chickens
  • Fatty Acid-Binding Proteins
  • Fatty Acids / metabolism
  • Liver / chemistry
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Sequence Data
  • Myelin P2 Protein / chemistry*
  • Myelin P2 Protein / genetics
  • Neoplasm Proteins*
  • Protein Structure, Secondary
  • Solutions

Substances

  • Carrier Proteins
  • Fatty Acid-Binding Proteins
  • Fatty Acids
  • Myelin P2 Protein
  • Neoplasm Proteins
  • Solutions