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Machine learning enables identification of an alternative yeast galactose utilization pathway.
Proc Natl Acad Sci U S A. 2024 Apr 30;121(18):e2315314121. doi: 10.1073/pnas.2315314121. Epub 2024 Apr 26.
Proc Natl Acad Sci U S A. 2024.
PMID: 38669185
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts.
Opulente DA, LaBella AL, Harrison MC, Wolters JF, Liu C, Li Y, Kominek J, Steenwyk JL, Stoneman HR, VanDenAvond J, Miller CR, Langdon QK, Silva M, Gonçalves C, Ubbelohde EJ, Li Y, Buh KV, Jarzyna M, Haase MAB, Rosa CA, ČCadež N, Libkind D, DeVirgilio JH, Hulfachor AB, Kurtzman CP, Sampaio JP, Gonçalves P, Zhou X, Shen XX, Groenewald M, Rokas A, Hittinger CT.
Opulente DA, et al. Among authors: ubbelohde ej.
Science. 2024 Apr 26;384(6694):eadj4503. doi: 10.1126/science.adj4503. Epub 2024 Apr 26.
Science. 2024.
PMID: 38662846
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Genomic and ecological factors shaping specialism and generalism across an entire subphylum.
Opulente DA, Leavitt LaBella A, Harrison MC, Wolters JF, Liu C, Li Y, Kominek J, Steenwyk JL, Stoneman HR, VanDenAvond J, Miller CR, Langdon QK, Silva M, Gonçalves C, Ubbelohde EJ, Li Y, Buh KV, Jarzyna M, Haase MAB, Rosa CA, Čadež N, Libkind D, DeVirgilio JH, Beth Hulfachor A, Kurtzman CP, Sampaio JP, Gonçalves P, Zhou X, Shen XX, Groenewald M, Rokas A, Hittinger CT.
Opulente DA, et al. Among authors: ubbelohde ej.
bioRxiv [Preprint]. 2023 Sep 8:2023.06.19.545611. doi: 10.1101/2023.06.19.545611.
bioRxiv. 2023.
PMID: 37425695
Free PMC article.
Preprint.
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Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces.
Peris D, Ubbelohde EJ, Kuang MC, Kominek J, Langdon QK, Adams M, Koshalek JA, Hulfachor AB, Opulente DA, Hall DJ, Hyma K, Fay JC, Leducq JB, Charron G, Landry CR, Libkind D, Gonçalves C, Gonçalves P, Sampaio JP, Wang QM, Bai FY, Wrobel RL, Hittinger CT.
Peris D, et al. Among authors: ubbelohde ej.
Nat Commun. 2023 Feb 8;14(1):690. doi: 10.1038/s41467-023-36139-2.
Nat Commun. 2023.
PMID: 36755033
Free PMC article.
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Synthetic hybrids of six yeast species.
Peris D, Alexander WG, Fisher KJ, Moriarty RV, Basuino MG, Ubbelohde EJ, Wrobel RL, Hittinger CT.
Peris D, et al. Among authors: ubbelohde ej.
Nat Commun. 2020 Apr 29;11(1):2085. doi: 10.1038/s41467-020-15559-4.
Nat Commun. 2020.
PMID: 32350251
Free PMC article.
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